GCM Type Strain Sequencing project GCM Type Strain Sequencing Project

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of Microorganisms

Type Strains Genome Database

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Rugamonas sp.  /  CCM 8940  / GCM10008120
Project Information
bioproject ID GCM10008120
Sequencing Status draft
Sequencing Center IMCAS
Genome Accession Number GCM60008120
NCBI Accession
Sequencing Information
Nucleicacid Type DNA Number of Reads
Genome Size 6,927,337 Reads Size 4,398,420
Vector GC(%) 66
N50 105,045 N75 56,221
Sequencing Status draft Assembly Status
Sequencing Quality Sequencing Tech Illumina
Sequencing Depth 147 Library Method
Sequencing Type de novo Sequencing Strategy Whole Genome
Sequencing Method Sequencing Center IMCAS
Update Date 2020-12-22 Genome Coverage
Kmer Num 1.02401997E9 Kmer Size 17
Insert Size 335 ± 5 Reads Length
Gap Number Scaffold MaxLength 410,164
Annotation results
  Number % of Total
Number of Assembled sequence    
Scaffold 173
Genes 5757
ncRNA 88
rRNA 5
5s_rRNA 5
tRNA 83
Annotation_genes 5534 96.13%
COG 3866 67.15%
INFORMATION STORAGE AND PROCESSING 719
CELLULAR PROCESSES AND SIGNALING 1245
METABOLISM 1571
POORLY CHARACTERIZED 613
KEGG 2722 47.28%
NR 5429 94.3%
SWISSPROT 1730 30.05%
VFDB 358 6.22%
CARD 58 1.01%
CAZy 128 2.22%
MetaCyc 920 15.98%
Pfam 4745 82.42%
PHI 264 4.59%
Repeat 1139
Minisatellite DNA 852
Microsatellite DNA 287